miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|215303279|gb|GE743562.1|GE743562 GTTGTCATTGTCAGGGTCATGTAAAAATTACATTACTGTGATAAATAATAAATGATTTTGTTTTATTATTGTAATGATAA
TAGTTTGAATTGTTGTAATGCATTTTCCATGTGTGTTTTACACAAGCATAACATTTATCTGTGGTTCAAATACTGTATCC
CAGCAACCGGCAAGTGAATGAGAGGTTACCATAGCAACAAAACATCATGAAAAGAAAAACAAGCCCGATCGATTCAACTG
GCTCTGGTGTAAGTACCATACTATACAAAATCAGTTCTTTAACTGAGGAAATCTCACCAAATATTGACTCTGGCTTGTGT
ACAAAGAAAATTATAATTCCCGGTAATCACGTCGAGCAAGCAATGGCTTACAAAAACAGTATTTGGTACAAATCGTTACT
CAATGCTGAGAAAACATGTTTGAAGGAAGACCAAATAAAAAAGATTCATTATAAGTTTGAAGATGGTAATGAAATGGTTG
AAGAATATAATGCGGACACCCGGGTGTTGTTAAGGCGCGCCTGGAAAGTGAAAGGGAAAATCGGAGGTGAAGGCAAATGG
TTAGTGGAAATTGGAGATCCTATACCTGATGCTGTTACAAATACAGATGCTCTGGACATAAAGGAGAGCAAAGATCAGCC
TGTTTTATTAAAAAGAAATACAAAAATCAATATAGAATGGAGAATACGCAACCTCCCAT




Most similar to sp|Q9BVM2|DPCD_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9BVM2|DPCD_HUMAN Protein DPCD OS=Homo sapiens GN=DPCD PE=1 SV=2
          Length = 203

 Score =  108 bits (271), Expect = 3e-23
 Identities = 49/105 (46%), Positives = 68/105 (64%)
 Frame = +3

Query: 384 WYKSLLNAEKTCLKEDQIKKIHYKFEDGNEMVEEYNADTRVLLRRAWKVKGKIGGEGKWL 563
           W +SL  A+KT L +D  +K+HY F DG EM EEY+  T  LL R W+VK  +G  G+W 
Sbjct: 6   WLESLRTAQKTALLQDGRRKVHYLFPDGKEMAEEYDEKTSELLVRKWRVKSALGAMGQWQ 65

Query: 564 VEIGDPIPDAVTNTDALDIKESKDQPVLLKRNTKINIEWRIRNLP 698
           +E+GDP P    N     IKES   P+ ++++TK++ +WRIRNLP
Sbjct: 66  LEVGDPAPLGAGNLGPELIKESNANPIFMRKDTKMSFQWRIRNLP 110